Life sciences · Preprint
arXiv · August 17, 2026
The material analysed did not support any firm read.
This is a preprint describing a computational algorithm (EMS Coreset) designed to improve efficiency of Optimal Transport-based coreset selection through closed-form updates and non-uniform weighting. The work is purely methodological, establishing theoretical consistency and stability properties, and demonstrates runtime improvements on synthetic and real-world benchmarks. It has no clinical validation or application to patient care.
Preprint.
Proposed method achieves competitive or improved approximation quality while substantially reducing runtime compared to Wasserstein- and standard Sinkhorn-based coreset selection, especially at large scale Asymptotic consistency of selected measure and Lipschitz stability to data perturbations established
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This is a methodological contribution presenting a novel algorithm for computational efficiency in coreset selection; it lacks clinical outcome data, patient populations, or validation against established clinical benchmarks.
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Coresets distill large datasets into small, representative subsets for efficient downstream learning. Yet Optimal Transport (OT)-based selection typically requires intensive computation of transport plans, limiting scalability. We introduce a scalable Sinkhorn coreset method that permits closed-form updates of the entropically regularized OT coupling by allowing non-uniform coreset weights. This produces centroids that generalize k-means via soft assignments. We establish asymptotic consistency of the selected measure and Lipschitz stability to data perturbations, providing accuracy and robustness guarantees. Across synthetic and real-world benchmarks, the proposed method achieves competitive or improved approximation quality while substantially reducing runtime compared to Wasserstein- and standard Sinkhorn-based coreset selection, especially at large scale.
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