Life sciences · Preprint
arXiv · October 2, 2026
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Multimodal Large Language Models (MLLMs) achieve strong performance across vision-language tasks, yet the internal mechanisms by which visual and textual information are fused across layers remain insufficiently understood. We investigate representative MLLMs from two architectural paradigms: concatenation architectures and native multimodal architectures. We conduct three progressively connected analyses: alignment decoupling identifies which modality changes, attention routing and entropy characterize how cross-modal information is distributed, and intrinsic dimensionality examines how fusion reshapes feature spaces. Separately, we perform causal intervention experiments as a validation of the resulting interpretation. As a supplementary analysis, we use visual CKA to examine the Platonic Representation Hypothesis. Together, these analyses reveal two distinct fusion pathways: concatenation models follow a text-first, vision-later pathway, whereas native models exhibit earlier visual-textual co-adaptation and feature-space reorganization. This work provides a mechanistic perspective for understanding multimodal fusion and supports architecture-aware diagnostics of multimodal representations.