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Life sciences · Preprint
arXiv · November 2, 2026
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Discrete diffusion models remain far less understood than their continuous counterparts, despite recent breakthroughs across modalities, most notably in text. Leveraging tools from continuous diffusion, we formulate a theoretical framework to track the class-conditional posterior in an online manner by combining conditional and unconditional model predictions. In masked language modeling, this posterior offers highly interpretable dynamics: tokens aligned with a class boost the posterior, while contradictory ones suppress it. We also show that the posterior can be used for logical guidance operations (AND, OR, NOT) in discrete diffusion. These operations enable precise control over generation, such as avoiding specific classes. In addition, we discuss a mismatch in the formulation of classifier-free guidance between discrete and continuous settings: discrete models mix the data distributions, while continuous models mix the marginals. We validate our methods and discuss their potential applications on synthetic data, with all quantities analytically tractable, as well as on MNIST, text, and antibody sequences.